Training data

Mouse embryo data

1. Mouse gastrulation

   • This is a subset of the mouse gastrulation atlas described in Pijuan-Sala et al Nature 2019. We have reduced the size of this dataset and we have re-annotated the cell lineages based on recent spatial transcriptomics studies of mouse gastrulation (see Lohoff et al 2021 and Kumar et al 2023).

   • There are 18,023 cells

   • 27,636 genes

   • 25 cell types or lineages

   • E7.0 to E8.5

2. Mouse gastrulation v2

   • This is also subset of the mouse gastrulation atlas described in Pijuan-Sala et al Nature 2019. We have included earlier time points and reduced the number of cells per cell type to 75.

Mouse training data from Tabula senis 10X.

1. Bladder

2. Fat

3. Heart

4. Kidney

5. Large Intestine

6. Lung

7. Mammary Gland

8. Marrow

9. Pancreas

10. Skeletal Muscle

11. Skin

12. Trachea